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PEAKS Studio

The complete software solution for proteomics.

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Overview

PEAKS Studio by Bioinformatics Solutions Inc. is a comprehensive software package for proteomics mass spectrometry analysis. It is particularly known for its de novo sequencing algorithm, which can determine peptide sequences directly from MS/MS spectra without a database. This is combined with database search (PEAKS DB), PTM analysis, and quantification tools to provide a complete proteomics workflow.

✨ Key Features

  • De novo sequencing
  • Database search (PEAKS DB)
  • PTM profiling (PEAKS PTM)
  • Label-free and label-based quantification (PEAKS Q)
  • SPIDER algorithm for homology search with de novo tags
  • Support for DIA and DDA data

🎯 Key Differentiators

  • Industry-leading de novo sequencing algorithm.
  • Integrated workflow combining de novo sequencing with database search for deeper proteome coverage.
  • Strong capabilities in antibody sequencing.

Unique Value: Maximizes protein identifications from MS data by combining traditional database searching with high-accuracy de novo sequencing, enabling the discovery of novel peptides and modifications.

🎯 Use Cases (5)

Shotgun proteomics Antibody sequencing Identifying unexpected PTMs or mutations Deep proteomics data mining Immunopeptidomics

βœ… Best For

  • Widely used for antibody sequencing due to its strong de novo sequencing capabilities.
  • Cited in numerous publications for comprehensive protein identification.

πŸ’‘ Check With Vendor

Verify these considerations match your specific requirements:

  • Genomic data analysis
  • Molecular visualization
  • ELN/LIMS

πŸ† Alternatives

Thermo Fisher Proteome Discoverer MaxQuant Mascot

Its core strength in de novo sequencing allows for analysis that is not possible with purely database-dependent search engines, especially for antibody sequencing or organisms with unsequenced genomes.

πŸ’» Platforms

Desktop

βœ… Offline Mode Available

πŸ”Œ Integrations

Works with raw data from all major mass spectrometer vendors.

πŸ›Ÿ Support Options

  • βœ“ Email Support
  • βœ“ Phone Support
  • βœ“ Dedicated Support (Varies tier)

πŸ’° Pricing

Contact for pricing

βœ“ 14-day free trial

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